Hiccup in speed of building nanocube

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Hiccup in speed of building nanocube

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I've been following the Nanocube project for some time and I'm now working on adding features for a university project. However, I've run into a problem building the nanocube where it experiences a major slowdown about half-way through the Nanocube generation process. Here is a screenshot where we can see a clear discrepancy in the time required to add another 10,000 entries to the Nanocube. Has anyone experienced this problem? I've tried a couple different datasets. Any help would be much appreciated.